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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015844016.1_cds_XP_016508896.1_21870
CDS Infomation

[gene=LOC107826429] [db_xref=GeneID:107826429] [protein=pre-mRNA-processing protein 40A-like isoform X4] [protein_id=XP_016508896.1] [location=join(45414..45446,46515..46580,46674..46991,47126..47269,53691..53755,53959..54028,58015..58067,60693..60750,60837..61177,61271..61340,61597..61695,61809..61877,61952..62029,62214..62300,63023..63057,63159..63264,63855..63935,64816..64908,65236..65289,65410..65526,65673..65771,66237..66284,66369..66461,69314..69421,69512..69576,69693..69795,74673..75083,75175..75309)] [gbkey=CDS]
Sequence

ATGGCCAGTAATCCTCCGCCATCTGGTCCACAGCCTCTTTGGCCTCCTTCAGTTGGATCC
ACACCACCTCAAGGTTTTGGTTCATCATTTCCCATGCAATTTCGACCTGCTGTATCAACA
CAGCAAGGCCAGCCCTTTGCTTCATCAATTTCAGCCTCTCCACAATATCGCCCTATTGGA
CAAACACCAAATGCTGGAATGCCTCCTGGTCATGGTCAAATACCCCAGTTTTCTCAACCA
ATGCAGCAGTTTCCCCCAAGGCCCAGCCAGCCGGGCCATGGTATACTTTCATCTCAGGCA
ATTCAGATGCCATTTATCCAATCAAGTATGCCACAGCCTCAACAAGTCATTCCGCCTTTG
AATAGTCACATGCCTGGTGTTAGTGGTGCTGGAAATCCATTCTCATCATCATATACGGTT
CAATCGTCATCCCAAATGCATGTTCCTCCTTTCCCTTCGGGGGGACAACCTTGGCTGTCA
TCTGGAAGTCAAACCACACCAGTGGCTGCCCCTACTTTACTGACCAGTCAGCAATTGTCA
GCTATAGCTCCATCCGTTCCGGCGGGCACAGCTTCACAGCAGAATGCGTCTGACTGGCAA
GAGTATGAAGCTGCTGATGGGAGACGATATTATTACAATAAAATTACAAAGCAATCAAGC
TGGGAGAAGCCTTTGGAGCTGATGACAACTTTAGAGAGAGCTGATGCGTCGACGGTATGG
AAAGAATTCACAACTGCAGATGGTCGAAAGTATTACTACAACAAAGAAACAAAGCAGTCT
AAGTGGACAATACCTGAGGAACTAAAGTTGGCTCGTGAACTGGCGGAAATATCTGCTGAT
CAAGTAGTTCAGACCGGAGCAAGCACAATTTCTGGTGTGCAAGTCACTGCAGCTGTAACT
TCAACAGAACAACCATCTGCTGTCACCCCGGCTAGCTCCACCCCTTCTTCAACGGTTTCT
GGAGTAGCTTCAAGCCCTGTTCCAGTTACATCTGCTGTTTCTGATCATGCTTCTCCTCTG
GTGGTTTCTGGATCATCAGCCATTCCGGCTGTGACCCCTGCGATGCCAAGTTCATCTGGT
GTCTCTTCACCTGCTGTTTCAGGGAGTACAGGATCTGCTACTCTGGCTAATGCCAGTCAA
AAACAAATGAGTGGCTTTGAAAATTTATCTCCTCAAGTTGCTAGTTCTTTAAGTGGAGCT
TCCATTCAGGATATTGAGGAGGCAAAGAAGGGCATGGCAGTTGCTGGGAAGGTTAATGTG
GTACCTGCAGAGGAGAAAACAACAGAAGAAGAACCTTTTCTATATGCGACCAAACAGGAG
GCTAAAAATGCGTTCAAAGCGCTGCTAGAGTTTGCTAATGTTGAATCTGATTGGACATGG
GAGCAGACAATGCGAGTAATAATCAACGATAAGCGATATGGCGCTCTGAAAACTCTTGGT
GAGCGGAAACAGGCATTCAATGAGTACTTGATGCAAAGGAAGAAACAGGAGGCTGAGGAG
AGGCGCCATAGACAAAGAAAGGCAAAAGAAGAATTCACAAAGATGTTAGAGGAGTCCAAG
GAACTCATTTCTTCTACTAGATGGAGTAAGGCAGTAACCATGTTTGAGGATGATGAACGG
TTCAAGGCCGTTGAACGAGAGGCTGATCGTGAAGATCTCTTCAGGAACTACTTGGTGGAT
CTTCAGAAAAAGGAGAGGGCAAAGGCTCAAGAGGAGTATCGACATAATAGATTGGAGTAC
AGACAATTTTTGGAGACTTGTGGCTTTATCAAGGTAGATACCCAGTGGCGCAAAGTCCAA
GATCTTCTGGAAGATGATGAAAGATGTTCGCGCCTTGAAAAAATTGATCGTTTAGATATT
TTCCAGGAATATATCCGTGACCTGGAGAAGGAGGACGAAGAACAGAGAAAATTGCAAAAG
GAACAACTGAGGCGCACGGAGCGTAAGAACCGGGATGCATTTCGAAAGATGATGGAGGAG
CAAATCGCTGCAGGCACGCTTACTGCGAAAACATCTTGGCGTGATTATTGTCAGATGGTT
AAGGAGTATGTGGCTTATCAGGCTGTTGCATCAAACACTTCTGGTTCGACACCAAAGGAT
TTGTTTGAAGATGTCGTTGAAGAGTTGGAAAAACAGTACCATGAAGACAAGATTCGAGTA
AAAGATGTAGTTAAGTCAGAAAAGATCACGATCTCGTCAACATGGACATTCGAAGACTTT
AAAGCTGCTATTTTGGAAGGAATTGGTTCCCCATCCATTCATGATGTTAATCTACAGCTC
ATTTTTGAGGATATAATTGAGAGAGCAAAGGAGAAGGAAGAAAAAGAAAGTAAAAAGCGT
CAAAGGCTTGCAAAAGATTTCACTGATAAGCTTAGTACCATTAAGGAAATAACTGCTTCC
TCTAGTTGGGAGGAGTGCAAAGAACTTGTGGAGGACAGCTCAGAGTTCAGAGCTATTGGT
GAAGAGACAATCTCAAGGGCAGTCTTTGAGGAATATGTTGCATGGTTGCAGGAGAAGGCA
AAGGAAAAAGAACGCAGACGAGAGGAGGAAAAGGCCAAAAAGGAGAAAGAAAAAGAGGAG
AAAGAGAAGAGAAAGGATAAGGAGAGAAGGGAAAAAGAGAGAGAGAAGGAAAAAGAGCGT
GAGAAGGAAAAAGAAAGGGGAAAAGAACGATCAACGAAAGATGAGGCAGATAGCGAGAGT
ATGGATGTAACAGATAACTATGAGCCCAAAGAAGAGAGAAAAAGAGAAAAAGACAAAGAG
AGGAAACATCGGAAGCGACACCATATCTCTAACGATGAGGTGACTTCTGACAAGGATGAG
AAAGTGGAACCTGAAAGAGACAAGGAAAGGAAACACCGGAAGCGACACCATAGCTCTAAC
GATGAGGTGGCATCTGACAAGGACGAGAAAGAGGAATCTAAAAGGTCCCGCCGACATAGC
AGTGATCGTAAAAAGTCAAAGAAGCTTGCACACTCACCTGAATCCGATGGTGAAAGTCGG
CATAAAAGACACAGAAGAGATCATAGGGATGGATCACGTCGAAATGGTGGTTATGAAGAG
TTAGAAGATGGGGAGCTTGGTGAAGATGGAGAAAGTTGA

Peptide Sequence

PEP ID

XP_016508896.1
PEP Infomation

PREDICTED: pre-mRNA-processing protein 40A-like isoform X4 [Nicotiana tabacum]
Sequence

MASNPPPSGPQPLWPPSVGSTPPQGFGSSFPMQFRPAVSTQQGQPFASSISASPQYRPIG
QTPNAGMPPGHGQIPQFSQPMQQFPPRPSQPGHGILSSQAIQMPFIQSSMPQPQQVIPPL
NSHMPGVSGAGNPFSSSYTVQSSSQMHVPPFPSGGQPWLSSGSQTTPVAAPTLLTSQQLS
AIAPSVPAGTASQQNASDWQEYEAADGRRYYYNKITKQSSWEKPLELMTTLERADASTVW
KEFTTADGRKYYYNKETKQSKWTIPEELKLARELAEISADQVVQTGASTISGVQVTAAVT
STEQPSAVTPASSTPSSTVSGVASSPVPVTSAVSDHASPLVVSGSSAIPAVTPAMPSSSG
VSSPAVSGSTGSATLANASQKQMSGFENLSPQVASSLSGASIQDIEEAKKGMAVAGKVNV
VPAEEKTTEEEPFLYATKQEAKNAFKALLEFANVESDWTWEQTMRVIINDKRYGALKTLG
ERKQAFNEYLMQRKKQEAEERRHRQRKAKEEFTKMLEESKELISSTRWSKAVTMFEDDER
FKAVEREADREDLFRNYLVDLQKKERAKAQEEYRHNRLEYRQFLETCGFIKVDTQWRKVQ
DLLEDDERCSRLEKIDRLDIFQEYIRDLEKEDEEQRKLQKEQLRRTERKNRDAFRKMMEE
QIAAGTLTAKTSWRDYCQMVKEYVAYQAVASNTSGSTPKDLFEDVVEELEKQYHEDKIRV
KDVVKSEKITISSTWTFEDFKAAILEGIGSPSIHDVNLQLIFEDIIERAKEKEEKESKKR
QRLAKDFTDKLSTIKEITASSSWEECKELVEDSSEFRAIGEETISRAVFEEYVAWLQEKA
KEKERRREEEKAKKEKEKEEKEKRKDKERREKEREKEKEREKEKERGKERSTKDEADSES
MDVTDNYEPKEERKREKDKERKHRKRHHISNDEVTSDKDEKVEPERDKERKHRKRHHSSN
DEVASDKDEKEESKRSRRHSSDRKKSKKLAHSPESDGESRHKRHRRDHRDGSRRNGGYEE
LEDGELGEDGES

Transcript Sequence

Gene sequence data has not been registered.